If e.coli is the problem I wouldn't use Jeyes either. The only time I would consider it would be for coccidia, and even then I'd go for steam cleaning options first. The fumes are so toxic there's no way I'd use it for routine cleaning of hutches even if it does say so on the bottle!
According to its literature, Virkon is effective against bacteria including e.coli. It's a safe disinfectant to use around animals and has virtually no smell, so I would definitely use something like this for a diagnosed bacterial problem.
According to its literature, Virkon is effective against bacteria including e.coli. It's a safe disinfectant to use around animals and has virtually no smell, so I would definitely use something like this for a diagnosed bacterial problem.